A Third Frazer Big Y 500: Part 2

Last month, I took a first look at Rodney’s Big Y 500 results. At that time, I was looking for unnamed SNPs that Rodney and Jonathan shared on the James Line. I was unable to find any. It looks like FTDNA and YFull were unable to find any also. When I wrote my first Blog, Rodney’s results were not at YFull yet. YFull is a popular service for interpreting Big Y results. I’ll take a look at Rodney’s YFull Results in this Blog. Before I do that, here is where Rodney fits into the Frazer YDNA testing tree:

Paul, Rodney and Jonathan have taken the Big Y test and Rick has taken the YDNA STR test.

Rodney at YFull

Before Rodney’s results were in, this was the YTree:

Jonathan and Paul were the last two id’s. Here is the present YTree:

YTree Changes

I see two major changes to the YTree. One is that there is a new non-Frazer Branch. The second is that the Frazer branch common ancestor is refined from 475 ybp to 375 ybp. From what we can tell, at the tree above, Archibald was born around 1690. That is roughly 325 years ago. So 375 years ago by YDNA is pretty close. I was expecting a new SNP for the James Line of the Frazers. These SNPs form about every 144 years. Note that at 375 years ago, that should represent 2 or three new SNPs. From my work on the STR side of the YDNA testing, it has seemed like the STR differences have been primarily on the Archibald Branch of the Frazer tree and not on the James side. It seems like this must be true for the SNPs also. This would have to be verified by Big Y testing of someone else in the Archibald Line. The only other possibility is that there is indeed another SNP for the James Line, but the testing results were not clear enough to determine that.

A New Parallel SNP Line to the Frazers

Here is the new line of R-BY26344:

While I’m thinking of it, there is another interesting point. The YTree shows that YP6488 was formed 1100 years ago. [The date that the SNP was formed is earlier than the common ancestor dates listed above. For the formed dates, see the YTree above.] The two branches below YP6488 were formed 700 years ago. However, the Frazer branch of YP6489 consists of six total SNPs listed here:

From 1100 to 700 years ago is 400 years. SNPs are formed on average every 144 years but in 400 years somehow the Frazer seemed to get 6 SNPs. On the other hand, BY26344 has is only represented by two SNPs over 400 years. That could mean that the Frazer line had all it’s SNP mutations between 1100 and 700 years ago, so now they are just coasting, so to speak.

Who Does BY26344 Represent?

YFull uses ID’s, so it can be difficult to tell who these people are. In the past, I have been tracking the Grants as their YDNA STRs have had similarities to the Frazers. That appears to be the case. However, there is also a Stuart as well as a grant in the YP6488 Group.

Here Grant and Stuart are still listed as YP6488, so that means that FTDNA may be a bit behind YFull for Grant and Stuart.

This is interesting as it shows us that Grant and Frazer had a common ancestor about 1300 A.D. To me, this would be before the time that surnames were in common use. However, by 225-375 years ago, surnames should have been in common use. This should mean that the two SNPs at the bottom of the tree should represent Grant and Frazer respectively. This also has interesting parallels to my wife’s line. A surname that was related to hers was also found to be a common ancestor about 700 years ago.

As a reminder, here is a map showing how close the Frasers and Grants lived in 1587:

My assumption is that this is where the common ancestors of the Grants, Stuarts and Frazers lived around the year 1300. This is to the Southwest and West of Inverness. The Frazers had the Grants surrounded. Also the Grants and Frazers surrounded Loch Ness.

I also note that one of the YDNA Grants testers mentions Carron. If I have the right Carron, it is to the Northeast of Glasgow. The Frazers were believed to be from the area of Ayr. I have also added dates to the various areas that the Grants and Frazers may have lived these areas.

Note where I have Grant above, I should have also included Stuart.

Further Questions on the Grant/Stuart Line

Assuming that the two IDs at YFull on the YTree are indeed Stuart and Grant, that poses additional questions for those two lines:

  • A common ancestor of 225 years ago is within the surname era. That means that there was some mixing of the two surnames due to adoption or other event.
  • Stuart appears to have been in Virginia before 225 years ago and Grant in Carron before that time. If this is correct, then the 225 years for a common ancestors may not be right.

I point this out partly, because it shows some common issues that could arise in a surname project. Fortunately, the testing of the Frazers so far has not resutled in similar issues.

Big Y 500 STRs

YFull looks at STRs deduced from the Big Y test. Here is how Rodney matches Jonathan and Paul:

This shows that, by STRs, Rodney is much more closely related to Jonathan than Paul. I think that there is a way to convert the distance to years, but I can’t find it right now. However, it appears to show that Rodney is more than twice as closely related to Jonathan as Paul is. This makes sense based on the genealogical tree at the top of the Blog.

Rodney is Running Out of SNPs

Here are Rodney’s novel SNPs at YFull:

Note that Rodney has no best or acceptable quality Novel SNPs. Novel SNPs are the ones that don’t match others. That means that all of Rodney’s good SNPs are already matched up with Paul and Jonathan as they should be. This makes sense as the time between the birth of Rodney, Jonathan and their common ancestor of Thomas Henry Frazer is likely less than 144 years.

For comparison, here are Paul’s Novel SNPs:

Paul has 10 Best or Acceptable Quality novel or private SNPs. It is likely that one or more of these SNPs could become an Archibald Line SNP if another Archibald Line Frazer descendant tests for the Big Y.

Perhaps a better comparison would be with Jonathan’s novel SNPs:

Jonathan is really out of Novel SNPs. He has no novel SNPs of any kind of quality.

Summary and Conclusions


  • Rodney’s Big Y 500 test has refined the YTree and dates of common ancestors
  • Many new SNPs prior to about the year 1300 may account for no identified SNPs after that date for the James Line
  • Another Big Y tester on the Archibald Line may create a new SNP for that branch
  • Assuming that the new Branch of BY26344 was for Stuart and Grant, that raises questions about the origin of those lines and about the date of the common ancestor for those two surnames.
  • The common ancestors for the Frazer distant relatives of Stuart and Grant has been moved up from 800 years ago to 700 years ago.
  • The common ancestor for the three Frazer testers has also been moved up 100 years: from 475 to 375 years ago.
  • The STR testing confirms the relative DNA closeness of Rodney and Jonathan who are in the James Line. This is also confirmed by autosomal DNA test results.

A First Look at Rodney’s BigY500 Results – a Third Frazer BigY

I had some good news recently. Rodney’s BigY500 results were in ahead of schedule.

Rodney’s Genealogy

Here is Rodney with other Frazer that have had YDNA testing. Paul, Rodney and Jonathan have taken the BigY test and Rick has taken the STR test.

Frazer SNPs

Currently, the SNP that defines this whole Frazer line is R-YP6489. This is part of the R1a group. With the addition of Rodney to BigY testing, we should be able to get a new SNP that defines the James Line Branch and more specifically, the Thomas Henry Frazer Branch. This testing is bringing us into relatively modern times.

Paul Compared to Rodney and Jonathan

When I compare my cousin Paul to Rodney and Jonathan I see this:

Paul has these Non-Matching Variants compared to Rodney and Jonathan:

  • 7947875
  • 8162400
  • 16784516
  • 20957961
  • 21457649

These are likely Variants on Paul’s side (the Archibald Line) which are not on the James Line side of the Frazer tree. The problem with these Variants is that they will not be named as SNPs unless someone else tests positive for them. There are two ways that this could happen. One would be that Rick (from the Archibald Line) takes a BigY test. Or, tests could be requested for each of the variants above and Rick (or another Archibald direct line male descendant) could test for the individual SNPs once there is a test protocol.

Looking for the James Line Variant

Where is the Variant or Variants that will define the James Line? Here is what Rodney’s niece Kim sent me. This is how Rodney compares to Jonathan and Paul. The comparison is by non-matching variants which is a bit confusing. The non-match could be on Rodney’s side, Joanathan’s or Paul’s sides:


What I am looking for is where Rodney does not match Paul. I want these to not include the Variants that I have listed above representing the Archibald Line. That leaves:

  • ZS3186
  • 20102008

These would be potential candidates for the James Line

Here are Jonathan’s matches:

These appear to be unique to Jonathan:

  • BY26998
  • BY28746
  • BY28749
  • BY28761
  • F4038
  • ZS3186
  • 11718822
  • 11720223

I was hoping that these lists would match up better. Rodney’s results have been uploaded to YFull for analysis, but the analysis is not yet done. It could be that there is an issue on how these variants were reported. The only Variant in common is ZS3186. However, this is a named variant which would probably not be used for a new branch.

Further, Jonathan has this list of Unnamed Variants:

Here it seems we are dealing with a lot of double negatives. Jonathan’s results report Variant 11103209. As this is not on Jonathan’s list of Non-matching Variants, should I assume that Jonathan has this variant in common with Rodney and Paul? I’m confused.

Here is Paul’s list of unnamed variants:

This matches pretty well with my original list for Paul, but it does not include 20957961.


ZS3186 was shared by Rodney and Jonathan but not Paul. However, this is already named. The YBrowse website has this information:

This was found in 2014 but never added to a YTree. It is in the J1 Haplogroup. For this reason, this SNP may be not considered good. Or, it may be determined that the original sample was in error(?) Again, we need some help from FTDNA or YFull in figuring this one out.

Variant 20102008

I had listed this Variant above. Is this the defining James Line Variant? This is not on Paul’s list of unnamed variants. This is good as Paul is from the Archibald LIne. 20102008 is shown as a non-matching variant between Paul and Rodney, so that leads me to believe that Rodney has this variant. However, 20102008 is not a non-matching variant between Paul and Jonathan. This would lead me to believe that Jonathan does not have this variant.

Frazer Variant Summary

This left me a bit confused, so I found out Rodney’s Unnamed Variants. Here is a summary of the three tested Frazers:

Hopefully, I can explain the inconsistencies in blue. The first row is YP6489. All the Frazers have this SNP and it currently defines the project.

Variant 1103209

The second row shows that Jonathan has Variant 11103209. This is actually a double discrepancy. Rodney and Paul do not show this Variant listed on their results but neither do they show this as an non-matching variant with Jonathan. Here is what I believe happened. The results for Rodney and Paul were inconclusive. As a result, the first go at looking at this variant was not enough to list this variant for Rodney and Paul. However, due to the uncertainty, it could not be clearly said that this was a non-matching variant between Jonathan and Rodney and Jonathan and Paul. By looking at the raw test data, it may be better to come up with a better analysis. Right now, this does not look like a defining Variant for the James line if there is some question as to whether Paul has this Variant.

Variants 11718822 and 11720223

These Variants appear to be Jonathan’s private SNPs. Jonathan is positive for them, but Paul and Rodney are not. That means that these likely formed in Jonathan, his father or grandfather after the time of Rodney and Jonathan’s common ancestor Thomas Henry Frazer born 1836. Once YFull has done their analysis, they will give an estimated date of SNP formation and an estimated date of common ancestor. The SNP formation is always the older date. In this case, we know the date of the common ancestor: 1836.

More on Dating

While I’m on the subject of dating. Here is the present Frazer tree going back over 3,000 years:

Jonathan and Paul are at the bottom of this YFull YTree. Based on their BigY testing alone, it was estimated that the SNP YP6489 was formed 800 years ago and that Paul and Jonathan had a common ancestor 475 years ago. This is to illustrate that the SNP formation is before the common ancestor. Going up one step is YP6488. This was formed 1050 years ago. There was a common ancestor there 800 years ago. I assume that this date fits into the formation date of YP6489 800 years ago.

Paul’s Private Variants – The Archibald Line

Paul has four private variants. These formed in the Archibald line between the time of Archibald Frazer born around 1690. The Archibald Line needs another person to test to have some of these Variants named as defining SNPs for the Archibald Line.

Rodney’s Variants

Rodney’s first Variant 2012008 has a question mark under Jonathan. That means that there is some question on Jonathan’s read. However, the fact that Paul was negative for this Variant makes it looks like this could be the new defining Variant that gets named as the SNP for the James Line. Rodney’s second Variant is common to only him at this time. Like Jonathan, this variant formed in either Rodney, his father or grandfather.

This appears to be Rodney’s only Private Variant:

What’s Next?

Kim has uploaded Rodney’s BigY500 to YFull for further analysis. YFull will get this information onto their tree. They will give age estimations and produce 500 STRs from the results. FTDNA will also be doing further analysis on the results. In addition, the R1a administrators will take a look at the results. However, they will like be interested in seeing what FTDNA and YFull have to say.

Summary and Conclusions

  • Rodney’s results show that there are some clear SNPs that could be added to define the Archibald Line. However, as Paul is the only Archibald LIne BigY500 tested person right now, these SNPs will not be named.
  • The James Line results are not as clear. Interpretaion of the results are needed. It is likely that Variant 2012008 will be a new defining SNP for the James Line for the Frazer DNA Project. It appears that this SNP occured between James Frazer born about 1720 and Thomas Henry Frazer born 1836.
  • We need to wait and see if FTDNA and YFull come up with further analysis.

Another Frazer Joins YDNA Testing

Joanna, who has had her brother tested for the BigY. informed me of a new YDNA match for the Frazer family. This is big news when a new Frazer match appears. The new match is Richard.

Some of Richard’s YDNA Matches

Here Richard shows up as the fifth match to my cousin Paul:

The new tester, Richard, has tested for 37 STRs. The first three on the list are known to be related to each other by genealogy. Those three and Paul all have ancestors from Northern County Roscommon by the early 1700’s.  Here is how they are related as best we can figure:

How Richard Shows Up on Jonathan’s List

Richard shows up as a Genetic Distance (GD) of 2 on Jonathan’s list. On Paul’s list, Richard has a GD of 4.

More YDNA Comparisons – YDNA TIP Report

On Jonathan’s match list, I ran the ‘TIP’ report. This is an estimation of how far away Richard and Jonathan’s common ancestor is:

This report makes it look like Jonathan and Richard are related in the not too distant past. The likelihood that Jonathan and Richard have a common ancestor in the last 5 generations is close to 90%. A 67 STR test would give better results as it is possible that Jonathan and Richard have more STR differences in the second tier of STRs. If these results are born out, there would be a good chance that Richard’s ancestors were from North County Roscommon Ireland.

TIP Report for Richard and Paul

If Richard is from the James Line of the Frazer Tree, then I would expect that Paul would be 6 generations to the common ancestor of James.

Looking at Richard’s STRs

One thing that jumped out at me was STR 447:

Those in green have a Frazer or Frasher ancestor. They also have a 447 STR of 24. All those above are Grant, Chisum, Hayes or Whittaker and have a STR value of 25 or higher. That could mean that among families that are closely related to the Frazers, the Frazers alone have a STR of 24 at this location. This gives me some confidence that Richard is related to our line of Frazers. The question then becomes whether his ancestors were in North County Roscommon or whether our common ancestor goes further back to Scotland.

STR 391

Another interesting STR is 391. Rick and Paul are both on the Archibald Line and have a STR value of 11:

Jonathan and Rodney are known to be on the James Line and have a STR value of 10.

This shows that the first Frazer known to be in North County Roscommon had a STR value of 10 at location 391. Somewhere on the Archibald Line on the left between the first Archibald and James born around 1804, the value of that STR changed from 10 to 11. This doesn’t prove that Richard is from the James Line as Grants, Chisum, Whittaker and Hayes also have a 391 value of 10,

Frasher and Frizelle

Jonathan also matches a Frizelle at 37 STRs at a GD of 1. Putting Jonathan and Frizelle into the TIP report also shows a probable close relationship. The Frizelle that Jonathan matches by YDNA has an ancestor of William Frizelle. I wonder if there is a connection between this William Frizelle and Richard’s William Frasher.

Further Options for Richard

Richard may want to upgrade to the 67 STR test. An autosomal DNA test would also be interesting to see if he matches anyone in the Frazer DNA Project. The autosomal test would be the less expensive option. If Richard is from the James Line, it is likely that the autosomal test would reveal that. If no matches with the Frazer DNA Project show up in the autosomal DNA test, then further YDNA testing may be of further use.

Summary and Conclusions

  • Richard’s recent YDNA test appears to show a pretty close relationship to Frazers from North Roscommon County, Ireland
  • Autosomal DNA testing, if taken, could reveal more matches to those already in the Frazer DNA Project for descendants of those Frazers from North Roscommon
  • Richard shares a STR that has been found to be unique to the Frazers up to this point
  • There is also a Frizelle who has found to be fairly closely related by YDNA to the North Roscommon Frazers, however his results have not been posted to my knowledge
  • It will be interesting to see what additional genealogy or DNA testing will reveal

A New Frazer Tested for YDNA

People say that YDNA is complicated. It is not too complicated. YDNA gets passed on from father to son unchanged. Except it does change on average about once every 144 years or so. That reminds me of how to have a good lawn. Plant grass seed. Wait 100 years and you will have a good lawn.

Rodney Added to the Frazer YDNA Tree


There is some confusion on the Archibald line (left side)  as to whether there should be two Archibalds or one under the top Archibald. Some researchers added one to make the dates look better, but I am thinking of taking one back out. For example, an alternate tree has one Archibald but has Philip born 1758 instead of 1776.

Here is the alternate tree:


If nothing else, the symmetry is better on this one.

Rodney’s STRs

Rodney tested for 111 STRs. That is a good amount. Jonathan also tested for 111 STRs. Rick and Paul tested 67. STRs are Short Random Repeats. These are repeats of certain markers on the YDNA. They may increase or decrease every so many 100’s or 1,000’s of years. Some markers change faster than others. Over a large amount of time these markers could go up or down and we wouldn’t know it as we weren’t around 1,000 years ago to test them. However, this tree only goes back to about 1690 or so, so we shouldn’t have to worry about that.

Rodney’s Vs Jonathan on the Thomas Henry Line

Jonathan’s sister asked me about Rodney and Jonathan’s STR comparisons. Rodney and Jonathan had a perfect match at 67 STRs but a one difference at 111 STRs. That was because their only difference was between STR 68 and 111. The actual marker for this difference is at DYS552. Rodney has a value of 24 and Jonathan has a value of 25. That means that Jonathan has one more Short Random Repeat compared to Rodney. Out of all the STRs, that is the one that distinguishes Rodney’s Line from Jonathan’s line.

Which Line Changed: William or Edward Fitzgerald?

And does it matter? It would be nice to know who changed, because that would mean either 24 or 25 would be ancestral, meaning that Thomas Henry either had 24 or 25 for that marker and one of the lines changed. I did not have the 111 STR test done for my cousin Paul, but he has taken the BigY. When he had that test done, I uploaded his results to YFull and they extracted some of the STRs from the BigY test. Unfortunately, the extraction from the BigY test does not get good reads for all the STRs. Fortunately, Paul did get a result for DYS552. He had a result of 25.

That means that 25 is likely the ancestral value. 25 would also likely be the value for Archibald Frazer born around 1690.

This is the way I’ve heard STRs explained. Pretend at every conception along the male line through the ages, the YDNA is going through a copying machine. All the different STRs are being copied. Every three generations or so, one of the 111 STRs has a copying error and one more copy or one less copy is made. In Rodney’s case, one less copy must have been made of DYS552 in either Rodney, Rodney’s dad or his grandfather, William Frazer.

There is one implication concerning the mutation in Rodney’s line. When Paul is compared to Rodney and Jonathan, it looks like he is more distantly related to Rodney than Jonathan. These differences are called GDs or Genetic Distances. However, based on the tree, Paul is related no more closely or further away from either Rodney or Jonathan.

It’s Simple

That is why I said at the top that YDNA is easy. Rodney and Jonathan have a common ancestor of Thomas Henry Frazer born 1836. Jonathan and Rodney have a GD of 1. That means that change happened after Thomas Henry Frazer as he had only one value for each of his 111 STRs. Because we know Paul’s result for DYS552, we know Thomas Henry Frazer’s value at location DYS552. There is only one catch. It is possible for STRs to go up and down. What if DYS552 changed more than once since 1690? This would be highly unlikely. If DYS552 was a fast-moving STR or if there were several thousands of years to the common ancestor, this would be more likely, but that is not the case here.

The Bigger Picture

Using the same principles, I should be able to get some ancestral values for our common ancestor, Archibald Frazer. However, let’s start with a smaller part of the Archibald tree, like we did on the James Line.

Here is Rick and Paul on the Archibald Line of the Frazer YDNA tree. Where Rodney and Jonathan had 3 generations to have YDNA changes from their common ancestor, Paul has 4 generations and Rick has 5 generations from their common ancestor of James Frazer born about 1804.

Rick has taken the 67 STR test but not the BigY test. Paul has taken the 67 STR test and the BigY test. As a result, he has some results from the 111 STR test, but is missing many of the STR markers between 68 and 111. Here are the differences between Paul and Rick:

Getting the Ancestral STR Values

Now I want to know what values James had for his STRs for 444 and 576. These are the values that Rodney and Jonathan have going up to the orignal Frazer ancestor born around 1690.

That means that Rick’s STR of 444 went down one repeat from 14 to 13 and Paul’s  STR of 576 went up from 18 to 19.

Putting it Together

Now we know that Archibald , born about 1690 had 444 = 14, 576 = 18 (oops, typo above) and 552 = 25. However, there are two other differences from the Archibald Line and the James Line.  It will be easier to show this on a tree:

Now there is a tie, so how do we tell which values are ancestral? (That should be CDY above.) In order to figure out the ancestral values, we have to go outside the Frazer project and bring in some more distant relatives: Grant, Hayes, and Stewart. Fortunately, I have already done this in a previous Frazer YDNA Blog:

This shows the ancestral value to be 391 = 10 and CDY = 35-38. Now we have our five ancestral values for Archibald.

Here is the final Frazer STR Tree:



  • If I drew this right, Jonathan has no mutations going back to Archibald, born about 1690.
  • Paul and Rick both have three mutations going back from the same Archibald.
  • There are more mutations on the Archibald Line than the James Line, but they average out.
  • Paul and Rick have a GD of 2. That represents differences in marker 444 and 576.
  • Paul has a GD of three compared to Rodney and Jonathan. This is based on markers 391, CDY and 444. 552 was not counted as Paul did not test at FTDNA for 552.
  • This tree contains some 67 STR results and some 111 STR resuilts.
  • Other direct male Frazer descendants that have YDNA STR tests should be able to tell what branch of the Frazer tree they are in based on this tree.
  • This gives an idea of how the mutations occur. There were two mutations that happened rather quickly between about 1690 and 1804 on the Archibald Line. So that was one every 57 years.  Rodney had one mutation. I’m not sure when he was born, but let’s say one mutation in 260 years. Let’s say Paul and Rick had a mutation about once per 87 years. An average between Paul or Rick and Rodney would be about one mutation in 173 years. This is comparing a bit of apples and oranges as some tested at 67 STRs and some tested at 111. I don’t know how to average Jonathan in as he has no known mutations.


Dating Using the McDonald TMRCA Calculator

Rodney and Jonathan

That should say generations at the bottom. Jonathan and Rodney have a common ancestor at three generations.  This calculator’s first choice for a GD of one at 111 markers is 2 generations away. Three generations would be the third choice.

Paul and Rick

This graph tops out at 5 generations. Paul and Rick are 4.5 generations away from a common ancestor, so that is close enough.

Paul Compared to Rodney (and Jonathan)

Paul and Rodney are 7 generations to a common ancestor. At least they are on the tree without the extra Archibald. This shows 8 as the first choice, but almost the same chance as being 7 generations away. Rick and Rodney should be at the same genetic distance (GD) and they show as 7.5 generations away from a common ancestor. These would also apply to the matches between Rick, Paul and Jonathan.

Summary and Conclusions

  • Rodney’s YDNA test has added some symmetry to the Frazer YDNA Tree
  • The YDNA test does not appear to be precise enough to tell us if the Archibald tree is correct or not. Either configuration would be reasonable based on the YDNA.
  • The Frazer STR tree sets down some results that places the four tested Frazer descendants in their different branches.
  • A Frazer that is unsure of his branch would be able to test his STRs and find out which branch he is in.



Frazer YDNA Update and Some Early Frazer Research

A few things have been going on the Frazer DNA and genealogy front:

  • Results are still coming in from our Frazer-related Stewart/Stuart BigY test results
  • A new YFull Tree has come out
  • A Frazer researcher has shared some of his information with us on Frasers in Scotland

Stewart/Stuart Big Y Results

In my last Blog on the subject I gave more information, so this is just an update. Once our Stewart tester got his Big Y results, there was still more analysis by the R1a YDNA project administrator, Martin. I was interested to hear what Martin has to say as these administrators are talented and take their volunteer position seriously. I found this part of Martin’s analysis interesting:

Around 1000 AD this subclade YP6488 splits in 3 family lines Grant, Stuart and Frazer. The date 1000 AD is not very certain because we see a wide variation in the number of private SNP’s in these family lines. Normally we calculate with 130 years per SNP (or one SNP mutation in 4-5 generations), but this average figure is only valid for a large number of samples. The total average number of SNP’s downstream M417 is on average about 50 for Subclade R1a-L664. However Grant and you have only resp 42 and 45 (see red number at bottom of chart) and the Frazer’s have more or less the average number of 50 (excluding the extra SNP’s found in the Yfull analysis). So the best guess for the MRCA of the Grant/Stuart/Frazer families is for me still 1000 AD, but with a large margin.

Here is the new R-YP5515 portion of the tree with Stuart added:

I erased the FTDNA kit numbers for privacy. I hadn’t realized that the red numbers were important at the bottom of the tree. Now I realize that they are, so I have included them. [See the explanation above in italics.] The addition of Stuart to the group has the effect of changing the separation date of the Frazers, Grant and Stuart to the year 1,000 A.D. Before Stuart, it showed Frazer and Grant separating at the year 900 A.D. Not a big difference, but it does show the effect of the Stuart test on  Grant and Frazer.

I was also in touch with Martin and he was seemed excited about a new member to the group:

Today we have new member, which I think is interesting for the members of subclade YP5515>YP6479  It is #______ from Sweden and he has the typical STR haplotype for this subclade. Up to now all members of YP5515 had their roots in Scotland/Ireland, but we expect YP5515 came originally from Scandinavia. This new member could be a proof that YP5515 came from Scandinavia if he is willing to do a BigY test.

So we will have to wait to see how this plays out. It appears that if this person were to do the BigY test, this could give us a more exact time of when our ancestors came from Scandinavia to Scotland. Speaking of this, I thought about Martin’s comments to our Stuart tester and came up with this drawing:

I used a little bit of guessing. It seemed like the best route from Sweden to Scotland would be by water. Perhaps our ancestors made some stops in current Norway before settling in the Inverness area. Their route from Inverness to the shore SE of Glasgow is based on some Frazer traditions. I noted that it is a pretty straight shot from there to County Roscommon where they certainly were according to the 1749 Census. They could have traveled by boat again, but there have been Scots known to be in Ulster also.

A New YFull YTree v 5.06

YFull analyzes Big Y results. For those that use their service, they come up with a tree and other analyses. Here is the current version of YFull’s YTree:

Compared to the last YTree, this has added YP6488 and YP6489. The Stuart tester is not yet included in this analysis. So his analysis should come out as YP6488. Note that YFull has a TMRCA of 800 years before present for YP6488 or roughly 1200 A.D. This is an important date as it is where there is a split between the Grant, Stuart and Frazer families. I feel that Martin’s tree may be more accurate. On his tree, the analogous date appears to be 1,000 A.D. That seems to get into those red numbers that I mentioned above. Perhaps YTree saw the fewer SNPs for Grant and Stuart and figured that represented a more recent date. Martin, being a real person, was able to take ambiguities into account and give a more plausible date.

Early Frazer Research

I am grateful to Alan for bringing together and to light research on Frasers in Scotland that might link to our Frazers in County Roscommon, Ireland. Alan’s research appears to indicate the following:

  • James Fraser of Knock married Mary Ramsay in 1628.
  • That James was the son of John Fraser of Knock
  • Mary Ramsay was the daughter of “Mr Andrew Ramsay one the ministers of Edinburgh
  • James was associated with “…Montrose during the sojourn of the royal forces in the west of Scotland. The laird of Knock [James] denied having had any concern in the protection…”
  • “James Fraser of Knock
    March 13, 1649: Presbytery of Irvine: it was reported on this day to the Presbytery that “upon the day of tendering the Covenant, the laird of Knock, because it was told him that he wald not admitted to the Covenant, absented himself from the kirk in the afternoon”. For “his scandalouslie absenting himself fra the kirk the day of swearing the covenant”, the Session of Largs were ordered not only to proceed in the process against the laird, but that this latter offence should be taken into the process. Paterson states ‘that in 1650 the process was still continued against him, though meantime he had fled to Ireland to escape the persecution to which he and others were subjected’.
    [Paterson, James: History of the County of Ayr, Vol. II, p. 309]”
  • Apparently this same James shows up in 1673 in Aberdeenshire as a “minister of word of God at the Church of Ellen

Knock is part of Largs Parish:

Here is a modern view of the updated Knock Castle:

Alan informs us that the modern day spelling of Ellen is Ellon:

This looks like it would be an interesting place to visit.

  • There is mention of an Archibald and William Frazer in reference 11 compiled by Alan. This appears to be in a document signing over the property at Knock. However, the relationship of Archibald and William to James and his younger brother Alexander are not apparent.

So where does this leave us? Alan’s research adds some clarity to the traditions of the Frasers of Knock circulated among some of the Frazer descendants. It shows that there was a controversial figure named James Fraser of Knock who held the Knock Castle and property. He got into some trouble with the authorities in the area of Largs, fled to Ireland for a while and showed up in Aberdeenshire as a minister where he apparently died.

My assumption is that the Frazers that moved to County Roscommon were familiar with James of Knock and probably were living in the same area before moving to Ireland. What is not sure is whether our Irish Frazers were closely related, distantly related or unrelated to James Frazer of Knock. Joanna of our study group has mentioned that there are Frasers and Frazers still around in the area of Largs. It would interesting to find out if there is any DNA connection between these Fraser/Frazers and our Frazers.

Any comments are welcome in case I have misinterpreted Alan’s research.

Stuart Added to the YDNA Group of Frazer, Grant, Hayes and Patton

I just found out about some exciting news. A Stuart that likely originates from the same area in Scotland as the Frazers has gotten his BigY results back. This is one of the best tests for YDNA. It places people in YDNA trees and shows how families originated. I’d like to look at those results to see where this Stuart fits in with Frazers and other related families.

BigY and YDNA Basics

The important thing to remember about YDNA is that it is very simple. You are only dealing with one Chromosome versus the 22 autosomal chromosomes. Then you are only dealing with one line of ancestors. That is your father’s, his father’s father’s and so on. The Big Y tests SNPs. SNPs are mutations that happen every four or so generations on average. The Big Y tests these SNP and how they have changed since our original ancestor – called genetic Adam. When you get your Big Y results you get a lot of SNP names. These are the SNP differences between you and Adam:

You will have the first SNP that differentiated you from “Adam” up to the one that got you into the R group. Our group of Frazer, Hayes, Grant, Patton and Stuart are in a still very general group called R1a. The understanding is that this group traveled a bit to the North of the R1b group. The thought is that our R1a group made their way up through the current country of Germany to Scandinavia. From there they made their way somehow to Scotland.

snps and variants

These SNPs carry down to what is called a terminal SNP. This is the last or most recent SNP that is named and is usually shared with another person. After that, the SNPs are not generally named and called Variants. These are the newest of all. Once others test and these Variants can be placed in a tree, they will extend the branches of the tree further into the present and will also be named.

what is confusing about YDNA?

STRs are a little more confusing, but I won’t be looking at them here. They can be confusing because the values for these can go up or down. SNPs however happen once and then they are set in stone. One of the major confusing things about SNPs are their names. The SNP names are based on the lab or group that discovered the SNP. That means that there is no logical progression in the name that shows the change from an older SNP to a newer SNP.

Here is an example from the R1a Project spreadsheet:

This shows two Frazers and an unnamed tester. The turquoise heading shows the progression of the SNP names. They start at M417 and end at R-YP6489. The unnamed person did not have his SNPs tested, so he has a conservative red designation for his SNP based on the values of his STRs which appear to the right. He is probably actually R-YP6489 based on his STRs, but he hasn’t taken the test, so he has a SNP value that is likely thousands of years older than R-YP6489. I’ll try to address a few more items of confusion as they come up. However, in general they have to do with the naming of SNPs.

So far:

  • YDNA SNPs are simple. According to YFull, there is a new high quality family SNP in your line every 144.41 years. They change about every four generations just on the direct male line. In my 2nd cousin once removed Paul’s case, four generations takes him back to his 2nd great grandfather. Between Paul b. 1944 and his great grandfather James Frazer b. about 1804 there are 140 years. Between those 5 people there is likely a new SNP. Or maybe none or two. But most likely one.
  • Based on these changes back to Genetic Adam we can make a YDNA tree.
  • The SNP names are complicated and don’t represent the progression of the SNP changes in the YDNA Tree.

Three Different YDNA Trees

There are three different YDNA trees for our R1a Group all trying to show the same thing. They are:

  • FTDNA Haplotree
  • FTDNA administrator Tree
  • YFull YTree
ftdna haplotree

FTDNA is the Big Y testing company. They have a tree that shows the end result of the Big Y testing. They call their tree the Haplotree. Here is the current tree for my Frazer cousin that I had tested:

There are several levels above this, but this is the current bottom of the tree. It ends in R-YP6489. This is consistent with the FTDNA R1a Project Spreadsheet above. A lot has been happening since I wrote my last Blog on the subject just two months ago. At that time our Frazer terminal SNP on this tree was YP432. Now we are four levels below that.

ftdna administrator R1a tree

This is a good tree, but it is private, so it is not published anywhere. I had referred to it in previous Blogs by taking out some of the ID’s. The other issue is that I got to see it when our Frazer Big Y test results came in, but I haven’t gotten any updates. Here is what I had before. It looks like FTDNA has since caught up with the FTDNA R1a Administrator tree:

One good thing that the Administrator does is put dates on the SNPs. So for example the date of our common Frazer ancestor is 1600. That is very close to the actual date of 1690 which is when we believe the common ancestor to have been born. Another good check is to see if the date between different surnames is before the advent of surnames. Notice that the year 900 A.D. splits off Grant (and now Stuart) from Frazer. I recently heard that the advent of surnames was around 1,000 A.D. and they came into use for several hundred years after that depending on the region and other factors. Another point is that, if the 1600 A.D. date is correct for this SNP, it would ensure that this is indeed a Frazer Family SNP. Any male Frazer that want to prove his Frazer lineage, would just have to test for this SNP. This SNP should separate the Frazers from non-Frazers – or at least our brand of Frazers.

From a recent Stuart email, I gather that his new result is R-YP6488 which is what Grant is also. That would place Stuart next to the Grant in the middle line above. Time to pull out the Clan map of the Inverness and South. This shows Fraser (Frazer), Grant, and Stewart (Stuart). For me, the geography pulls together what the DNA is showing us. That is, that at least this group of Frazer/Grant/Stewart had a common ancestor probably before the beginning of taking on of surnames in this area South of Inverness.

According to the R1a Administrator: “It looks like between 1400 BC and 400 BC some (or maybe only one) YP432 people migrated from Scandinavia to Scotland.” I am guessing they hung out there for 1,000 years or so. In 900 A.D., one of those former Scandinavians had children. Their descendants stuck around in the Inverness area for several hundred years. When people were taking on clan names, they took on the names of Fraser, Stewart or Grant probably based on where they were living at the time. We have another Chisolm/Chisum who has tested STRs but not the Big Y. He appears to fit into this pattern also.

Yfull Ytree

I wrote my last two Blogs on Frazer YDNA in mid July and the new YFull YTree v5.05 is dated 30 July 2017. It is big news when this tree comes out. Here is the latest version.

On YTree’s web site, they say they try to come out with a new YTree every month, but it seems more like two months before they come out with a new one. So it is now that YTree is lagging behind FTDNA. The Frazers are shown as being at R-YP6479. That is correct, but outdated. They actually are YP6479>YP6488>YP6489. When the new YTree comes out, this should be corrected. Note that next to YP6479, it says, +12 SNPs. When you hover over this box, the additional 12 named SNPs appear. They include the SNPs YP6488 and YP6489 which now form branches. By seeing these new SNPs, it is like we are going back 1200 years or so and seeing these new branches and families form.

What people wait for is the YTree’s dates. YFull has YP5515 as formed 3200 years ago and the TMRCA which is time to the most recent common ancestor as 2200 years ago. It will be especially interesting to see what YFull comes up with for dates on YP6489. At this time, YP6489 seems to be a Frazer family-only SNP as no other families have laid claim to it.

One of the down sides of YFull is that they don’t have all the testers. They only have people in the tree that have signed up for their service. Another issue is that YFull uses ID’s only, so in order to find out who the ID’s belong to you need to message the ID contact. In the tree above, my Frazer cousin is the ID without the ‘new’ designation after it. However, they do have advantages over FTDNA which make them a worthwhile option to use in Big Y analysis.

FTDNA SNP Matching and the Mystery SNP L1012

FTDNA’s Big Y SNP matching is one of those things that doesn’t work well. As I mentioned, my cousin Paul and (by inference) I share our terminal YP6489 with one other Frazer tester. However, when I choose to look for SNP matches at zero difference, it appears to give me 35 entries. Our new tester Stuart is not included in those 35. It appears that the SNPs have not been updated for this search. I think that FTDNA tried to correct this by putting in a subclade search option at the top of the SNP matching area:


This feature usually works. However, the R-Y2894 SNP seems out of place as it is several layers above R-YP5515. Here is the result when I choose R-YP6488:

The right people come up (Grant and Stuart), but it shows that there is not a match on L1012. When I look Up L1012, it appears to be an early “Adamic” SNP:

I suppose that there a few kinks in the FTDNA system, unless I am missing something.

Implications of R-YP6489

YP6489 is a fairly recent SNP. So far, this SNP has been dated at about the year 1600 by the R1a Administrator. This SNP came about because of tandem Big Y Frazer tests. As a result, we were able to get a SNP that represents the Frazer family. This SNP can be used to verify that a Frazer male is part of our Irish Frazers. There is another possible use of this SNP. Say that a Frazer with no known Irish history were to test positive for this SNP. That would forge a link between Ireland and the part of Scotland that the Frazers moved from. There may be no further paper records to be found that would link the Frazers to Scotland. There were no immigration requirements for moving from Scotland to Ireland. Many of the vital records have been lost or destroyed. However, the DNA could be the “record” that would link our Frazers to other Frazers that never moved to Ireland.

The YP6488 SNP does not show a single family origin for Grant and Stuart. YP6488 is also shared by our two Frazer testers. The Grant and Stuart families likely have a SNP at the level of YP6489 that represents each of their families. To get to this level would require an addition Grant or Stuart Big Y test. However, if another Stuart or Grant were to test positive for YP6488 by just doing a single SNP test, they would have proof that they are looking in the right area.

Summary and Conclusions

  • Our new Stuart tester is a welcome and enthusiastic addition to our part of the YDNA tree.
  • The Stuarts, Grants, Frazers and others have shared early ancestry. This has now been determined by YDNA testing
  • The area that the Stuart, Grant and Frazer families originated from was likely just South of Inverness
  • Single testing of YP6489 should indicate Frazer ancestry.
  • Single testing of YP6488 should indicate at least Grant, Frazer or Stuart.
  • The next step is to wait for updated YDNA trees from YFull and the R1a Administrator.

A New Frazer Tests for YDNA

It is big news when a Frazer tests for YDNA. YDNA is what is passed down from father to son only. So it is the perfect test for a family surname study like we have for Frazer of Roscommon, Ireland. The other reason that it is big news is that there are not that many male Frazers around to do the testing. We previously had 2 tested for YDNA. Now with Rick’s new test, we have three.

Frazer YDNA and Genealogy

I (and others) have pieced together a Frazer genealogy. It is not perfect, perhaps. That is why DNA testing is needed to affirm the work that has been done. Autosomal DNA is good, but the effectiveness tapers off as we go back more generations. Also autosomal DNA is not specific to a surname, so it could apply to any of hundreds of ancestors the further we go back in time. YDNA on the the other hand, is specific to one male line – in this case Frazer. There are two types of YDNA. One is STRs which Rick tested for. These are good, but there are some problems in interpreting them as I will explain later in the Blog. SNPs are the most exact YDNA test. The other two Frazers, Paul and Jonathan have tested for SNPs through the BigY Test.

Rick descends from George Frazer from Martinsburg, NY. George Frazer moved his family to Canada and left many descendants. I have more on that family here. [Edit: Rick’s cousin Pat replies, “It was Richard Patterson Frazer that brought his family to Canada from Martinsburg.   George was born there but came to Canada with his family as a child.”] Many years ago, I convinced Bill, one of those descendants,  that he and I were related based on genealogy. Even though I wasn’t 100% sure myself, I argued my point with Bill and he finally agreed that we were related. Later, I convinced Bill to take an autosomal DNA test which did show that he was related to my family and many other Roscommon, Ireland Frazer Families. Since then, others have tested and confirmed the relationships. Now we have Rick who has tested his YDNA proving a more certain link on the male Frazer line. So this has been a several year journey starting with traditional genealogy, followed up with autosomal DNA and YDNA testing. Here is the tree of the three male Frazers who have tested for YDNA:

This genealogy is the best that we could do with what we have. There are some uncertainties about it. We have other’s research with names but no references. We have the Elphin Census of 1747 and this includes a widow Mary Frazer. She is presumed to be the widow of Archibald Frazer born around 1690. There are two other Frazers in that Census who represent the Archibald and James Lines. Further, I have supposed that James Frazer b. about 1804 is my ancestor. However, this requires the marriage of two first cousins. This was not that unusual apparently back in the day. Those belonging to the Church of Ireland wanted to marry other Church or Ireland people. In fact, there were laws in place requiring that. However, those from the Church of Ireland were in the minority.

According to the chart above:

  • All the testers have the top Archibald as a common ancestor. Rick and Paul also have James Frazer b. about 1804 as their common ancestor.
  • Rick is 9 generations from Archibald b. about 1690. Paul is 8 generations away and Jonathan is 7 generations away from the first Archibald.
  • Paul and Rick are third cousins once removed
  • Jonathan is a 6th cousin once removed from Paul and 6th cousin twice removed from Rick.
  • Assuming that Rick, Paul and Jonathan were born around 1950, there would be about 260 years from the first Archibald to our three YDNA testers.

Rick’s New YDNA STR Results

Based on the above tree, we would expect that Rick would be more closely related to Paul than Jonathan. That is the case. Ricks closest match is to Paul with a Genetic Difference (GD) of 2. His GD to Jonathan is 3. The GD is the difference in STR mutations between two people. Here are all of Rick’s matches by STRs. He has more matches than Paul or Jonathan:

Here is how Rick’s STR matches compare with Paul’s and Jonathan’s. The numbers are GDs. So a larger GD is a more distant YDNA match. A blank means more than 7:

  • I put the matches together that matched all three Frazers.
  • The light blue highlighted names have taken the BigY Test
  • The SNP Tree below based on BigY SNPs shows that Grant is a closer match to Frazer than Hayes. This seems clear from the STR matches above also
  • The chart points out all the Grant matches. Half of the 10 Frazer STR matches are with Grants.
  • Rick is the only Frazer matching Hayes. This backs up the SNP tree below.

These are the same names that I have been tracking by SNPs. So that is good that the SNPs and the STRs agree with each other. Here is the new SNP tree that was developed by the R1a L664 Administrator Martin:

  • Patton is the most distantly related to Frazer and doesn’t show on any Frazer’s STR match list.
  • Grant shows as the closest match, then Hayes.
  • Chisum doesn’t show on the SNP map as Chisum has not taken the BigY Test.
  • Stuart doesn’t show yet, but he is in the the process of taking the BigY Test, so he will eventually show on the SNP Tree.
  • If Rick had taken the BigY test, he would have formed a branch under the Archibald line on the lower right of the tree. Rick and Paul would likely share some of the SNPs now shown as private SNPs for Paul and both Paul and Rick would then have their own new private SNPs.
  • Rick must share all the SNPs in the yellow box above the ca 1600 A.D date. These are the five brand new SNPs YP6489 through YP6493 that are right now Frazer only SNPs.

A Simple New Frazer STR Tree

A STR Tree for the Frazer should follow the genealogical tree and the SNP tree. Here are the STRs and where Jonathan, Paul and Rick differ:

Normally, the mode would be taken as the oldest STR. However, in the case of DYS391 I believe that based on comparison with other STR tests for Grant, Chisum, Whittaker and Stewart, that the 10 value of DYS391 is the older value. Likewise for CDY which changes more quickly than other STRs, I took 35-38 to be the older value. Prior to Rick’s results, I had this tree for Jonathan and Paul:

In this simple tree, Paul had all the STR changes since the 1690 Frazer ancestor and Jonathan had none. However, there is some guesswork in drawing this out. One rule is to make the chart as simple as possible, which is what I did. This means having the least amount of changes. It is sometimes called the rule of parsimony. Ambiguities in STRs is why some people prefer the SNP trees as there is little or no ambiguity in SNPs. Now note the above chart. Paul and Rick share 391 = 11 and CDYa = 35-40. Here is the new Frazer STR Tree with Rick included:

This shows:

  • Paul has his own STR mutation of 576 = 19 which happened sometime after 1804.
  • Likewise, Rick has his own STR mutation of 444 = 13 which defines Rick’s relatively recent branch.
  • The GD of 2 noted above between Paul and Rick are for markers 576 and 444.
  • The GD of 3 between Paul and Jonathan are for markers 576, 391 and CDYa.
  • The GD of 3 between Rick and Jonathan are for markers 444, 391 and CDYa.
  • The STR tree gets more difficult to draw further back from the present time. This is because more variables come into play such as parallel mutations and back mutations.
  • It would be possible to draw a STR Tree for the Grant, Hayes, Stewart, Chisum, Whittaker Tree, but I will leave that for another time.


  • The Big Y test for Paul and Jonathan have defined shared SNPs for the Frazer line and Private SNPs for the Archibald and James Lines
  • Ricks STR test has defined shared STRs for the line of James Frazer who was born about 1804. Any future testers from this line should be able to confirm descent from this line by testing for 391 = 11 which is a slower moving STR. CDYa would be a less reliable STR as it is a STR which changes much more often than most.
  • STR mutations that are unique to Rick and Paul cannot be dated precisely as they could have happened anytime after James Frazer of 1804 was born until Rick and Paul were born. That would be roughly between 1830 and 1950.
  • At the 67 STR testing level, on average, one STR change takes place about every 140 years. Jonathan shows no STR changes the way the chart was drawn. This would be less than average for him. Paul and Jonathan should have had 2 changes each, but each had 3 changes. This means they got the extra two STR changes that Jonathan should have had since 1690. It all averages out.
  • All this DNA testing makes me feel more close to my Canadian Frazer cousins.


A New R1a-YP5515 Tree: Patton, Hayes, Grant, and Frazer

Thanks to a Patton, Hayes, Grant and 2 Frazers that have had a BigY test, and the R1a-L664 Administrator, we now have a new SNP Tree. I was happy to hear that Martin, the L664 Administrator, fresh from a 6 week holiday in Australia, had come up with a new tree for YP5515.

First, the YP432 Tree

Technically, at FTDNA where the testing took place, Patton, Hayes, Grant and Frazer are still listed as YP432. FTDNA is a bit behind. Here is the YP432 Tree that Martin has recently updated:

I had mentioned previously that YFull, a business that analyzes these results had branching under YP431, but not under YP5515. The above tree by Martin now shows 5 branches under YP5515 vs. 6 under YP431 on the right side above. Here is YFull’s version of the tree. In their defense, they are coming out with a new YTree this month.

Dating the New Tree – Scandinavians and Scotsmen

The other good news about the new tree Martin developed is the dates. Before the new tree came out, we had YFulls date of a common YP432 ancestor of 2800 years ago. That was not very helpful. Martin’s tree has a date for YP432 which is about 1500 B.C which is even older by 700 years. I will be watching for the new YFull YTree to see if they have a date adjustment for YP432 and a new date for YP5515. Martin goes all the way up to 900-1600 A.D. for the SNPs that the two Frazers share. That is a huge difference from YP432 to the Frazers of 3100 years. Martin also points out that it was likely between 1400 B.C and 400 B.C. when our Scandinavian ancestor or ancestors decided to move to Scotland.

That means that the Frazers and their Patton, Hayes and Grant relatives are actually Scandinavian if we go back far enough. I suppose after a few hundred years of being in Scotland, no one could tell that they weren’t originally Scots. They were certainly in the area before the adoption of surnames. And when those surnames were adopted, they were Scots surnames. On the other hand, the YP431 Branch of YP432 appears to have remained in Scandinavia for the most part.

The YP5515 Tree

The YP5515 Tree is very new even though it dates back to 400-1400 B.C. And at this point there are only 5 BigY tested people on the tree, so we are part of an exclusive club:

Here I have taken out the ID’s for privacy for Patton, Hayes, Grant and Frazer. I did add the two Frazer lines: James and Archibald. This shows that Patton branched off quite early. The tree also appears to show that as late as 800 A.D. Hayes, Grant and Frazer had a common ancestor. Keep in mind that this would have been before the adoption of surnames. Roughly between 800 and 900 A.D. Grant branched off. The dating of the common ancestor of James and Archibald Frazer at 1600 is interesting as we believe the genealogy shows a common ancestor at around 1690 or so. The biggest change was in the SNPs of the two Frazers. They went from FTDNA’s official YP432 to YP432>YP5515>YP6479>YP6488>YP6489.

The above Tree should be taken as quite authoritative. However, it is possible that it could change by the addition of branches as others test for the new SNPs. It appears with all the Patton SNPs that there is quite a bit of room for additional branching. In my previous Blog, I had mentioned a Stewart and Chisolm. These matched by STRs, but had not taken the BigY or SNP tests. It would be possible for Stewart and/ór Chisolm to test and more precisely place themselves on the tree above (based on the SNPs they test positively or negatively for).

Another thing to note on Martin’s Tree is that there are now SNP names rather than just position numbers. For those SNPs that are shared most of them now have YP numbers. The private SNPs that are unshared, remain as position numbers.

Where My YP5515 Tree Went Wrong

When Martin came up with his tree, he noted that mine was mostly right. Here was my mistake:

I had a question mark by Patton as he had a bunch of missing SNPs that others had. Martin rightly had Patton descending from YP5515 on one side and Hayes, Grant and Frazer on the other being all YP6479. It is a subtle distinction, but an important one. Basically it means that Hayes, Grant and Frazer do not descend from the Patton Line, but they both have a common ancestor.

The other difference I notice is that I had the James Line with 4 private SNPs and Martin had them with only 3. Martin does not show the James Line as having the Private SNP #19995371. I checked our James Line tester against Grant and see that they both share that SNP, so that cannot be a private SNP for our James Line tester.

Frazers One Step Further

There is one other male Frazer on the Archibald Line who is in the process of testing YDNA for STRs. If I were to get a test method for each of the Archibald Line Private STRs and this tester were to test for each of these, we would be able to have one more branch on the Archibald Line with a named SNP defining that branch. Those two people have the common ancestor of James Frazer b. about 1803.

What’s Next?

Next we wait for the new YFull YTree. This will give a second opinion on Martin’s Tree. However, YFull does not have all the tested people that Martin has. After that, we wait for the STR results of the other Archibald Line person.

First YFull Analysis of a Frazer BigY Test

I have written quite a bit on Frazer BigY testing. To see my Blogs on the subject, they should be categorized under Frazer YDNA. Paul and Jonathan have both tested for the BigY. BigY finds all the SNPs of the YDNA of a male. These SNPs are both known and previously unknown SNP. These SNPs change roughly every 100 years. There are terminal SNPs, private SNPs and public SNPs, so it gets a bit confusing.

Frazer of North Roscommon, Ireland Terminal SNP

First, I forgot to mention what YFull is. YFull analyzes the Family Tree DNA (FTDNA) BigY test. For Haplogroups like R1a, which is what the Frazers are, they are good at analyzing the information and coming up with new SNPs. Sometimes, they are more up to date than FTDNA which seems ironic as it is FTDNA that did the test to begin with. For example, YFull has my cousin Paul as R-YP5515. FTDNA has Paul’s terminal SNP as R-YP432 which is older. This is how I have drawn it in previous Blogs:

The bottom line is that Frazer and Grant and perhaps Patton are all R-YP5515, but FTDNA doesn’t show it yet. YP5515 is in a box with many other SNPs, but YP5515 is the representative SNP for the group. That means that a bunch of SNPs are in that block, but we don’t know which one was formed first. At any rate, it is a point at which branching occurs. That is one good thing about SNPs. As they are unambiguous, they are good at forming SNP trees, which as basically ancient family (or clan) trees.

FTDNA’s Haplotree Vs YFull’s YTree

Here is how Frazer shows up on FTDNA’s Haplotree:

FTDNA only shows YP431 branching off, but not YP5515.

Here is YFull’s YTree:

In the tree above, Paul is indicated with a red “new”. The YTree tells me a lot more than the FTDNA Haplotree:

  • The R-YP5515 branch beneath R-YP432 is a lot smaller presently than the R-YP431 branch.
  • FTDNA is missing a lot of SNPs under the YP431 branch
  • The R-YP431 branch has a lot of people that appear to have Norwegian ancestors. From my previous Blogs, I have shown that the YP5515 branch appears to be from Scotland.
  • YFull is popular for it’s dating. YP431 shows a common ancestor at 1900 years before present. I assume that once Jonathan’s results are submitted to YFull, there will be new SNPs named and a new date for YP5515.

YFull’s Look At Private SNPs

Here we get into terminology. YFull calls these Novel SNPs, but when I choose them, they are listed as Private.  A simplified explanation is that a Novel SNP is an unnamed one and a Private one is one that is not shared with anyone else (at YFull). YFull gives novel SNPs a YFS number. Here is the list of Paul’s best quality Novel SNPs:

This shows that Paul has 42 Novel SNPs. What I don’t show is that there were 16 ambiguous SNPs. The other categories beyond ambiguous had no Novel SNPs. Those categories are Low Quality, One Reading and INDELs.

I can download the Novel SNPs to an Excel Sheet. Here are Paul’s SNPs that are not shared with Jonathan:

This shows that Paul has 4 Novel SNPs, what FTDNA calls Variants. In my tree above, I had that Paul had 5. When I checked Variant 28804880, I see that was a mistake, so I’ll take that one out.

This is a better result as now there is symmetry between the Archibald Line and the James Line. This shows exactly 4 new novel variants on the Archibald Line and the James Line since their common ancestor. 150 years is an average period for new SNPs, so that could mean 600 years to the common ancestor if these are all actually new SNPs. This could mean that the Frazer had more variants than average or that this R1a branch of YP5515 has more than average. The actual time to the common ancestor is about 260 years if we have done the genealogy correctly.


YFull exists because FTDNA is not the best at analyzing its own BigY results. However, FTDNA has a few features that YFull does not have. With FTDNA, one can tell who the matches are. In YFull the matches are just by ID. With FTDNA, I can match by Variants which is useful. At Yfull I can only find matches by known SNPs.

Number of Novel variants

As above, YFull shows 42 Novel SNPs for Paul. This is close to what FTDNA shows. FTDNA shows that Paul shares 36 Novel Variants with Jonathan and that he has 4 unique Variants. That adds up to 40. That would give the impression that YFull is showing 2 more Novel Variants compared to FTDNA. But that is not the case. Actually, there is very little agreement at all.

This is the top of my spreadsheet that compares the Variants. Y5515 is in gold. YFull does not report any of the Variants in the YP5515 block or above. FTDNA does as it is out to date with its Variants. That is why there are so many blanks in the Paul YFull column. That is a difference of 21 SNPs to begin with. Going down the spreadsheet, the Variants that are listed as being the same in both FTDNA and YFull are shown in the Paul YFull column:

This shows that there are only 17 Variants out of 40-42 reported that are the same in both FTDNA and YFull. Below this are 25 Variants that YFull lists that FTDNA does not list. This is perhaps because FTDNA lists only the highest quality Variants. The 25 Variants that YFull lists includes Acceptable and Ambiguous Quality SNPs.

Next Steps

I have recently heard from Martin who is the L664 Administrator. He is back from a trip to Australia and working on getting these SNPs into a new tree. Hopefully Jonathan’s results will make their way to YFull also for analysis and help build out the YTree.




BigY Update On R1a Frazers

The Frazers originating from North Roscommon, Ireland are R1a in YDNA terms. That makes them a bit of an oddball compared to other Frazers. Most other Frazers spell their name Fraser and are R1b. Our Frazer branch is L664 under R1a. That group of people lived around the North Sea according to the L664 YDNA Project administrator.

That means that at some time our Frazer ancestors probably moved from the Netherlands or Germany up to Denmark or Norway and then over to Scotland. Or they may have gone directly to Scotland or up through the England. We don’t know. We do know that this probably happened before the time when surnames were used. Once in the area of present day Scotland, they mixed with the earlier Britains who were R1b. Perhaps this is the area where they lived when they took on the Fraser/Frazer name:

The map above shows Fraser, Chisolm, Grant and Stewart. All these names have been found to be related to Frazer by YDNA. Hayes is also related by YDNA, but I think Hayes may actually be a Grant around the year 1600 or after. Here is a closeup of the Fraser Lands in 1587, showing proximity to the Chisolm and Grant Lands:

Stewart Update

In my previous Blog on BigY, I had drawn a STR tree without Stewart. Here is the new one with him included:

Stewart/Stuart is in red above. He is important, because his STR signature is the same as the common ancestor for Grant, Hayes and Stewart. If I had room, I would draw another line to the bottom of the page with Stewart showing no STR changes. Here is Stewart added to the SNP Tree:

The Stewart on the chart has expressed interest in BigY testing, so there should be more updates to come.

Grant Update

I was pleasantly surprised to see the results of a recent Grant BigY test. In the SNP tree above, the bolded names have taken the BigY, so I will need to update Grant. In my STR tree, I had two Grants. The one that took the BigY test had his most distant ancestor as:

James GRANT “of Carron”, 1728 – 1790

Here is my STR update for Grant of Carron. All I did was make it more clear which Grant was which:

Grant of carron BigY

The Grant BigY test threw me off a bit as the results showed that he was one SNP away from Paul and Jonathan. Usually, I am looking for a zero SNP difference. Grant of Carron shows a L1012 SNP that Paul and Jonathan do not have. Unfortunately, I don’t know why that is the case. Also I don’t know much about the L1012 SNP. It could be that the L1012 SNP was tested in error, or that Paul and Jonathan should have that SNP or that the L1012 SNP is branching below the green box where I have Grant on my SNP tree. The last option does not seem likely as I don’t have named SNPs in the green box, so there shouldn’t be named SNPs below the box.

Grant matched Paul and Jonathan on Variant 23614618. However, Hayes did not match on that variant. That could lead to this tree:

This change pointed out an earlier mistake I had made. I had 23619535 in the Archibald Line and in the orange box. I should have had 23614618 in the orange box. At any rate, that variant is now moved up to the Frazer/Grant mustard colored box. Another option would have been to move 23614618  to the green box of Hayes, Grant and Stewart. This would be assuming that Hayes should have been positive for 23614618 but had a poor test result. All these trees are preliminary until I wait for the R1a Administrators to come up with a more official tree. Another option would be to wait for the YFull analysis. However, that is dependent upon testers using their service. At any rate, it is good to have fewer SNPs in the orange box as we are bumping up against a likely Frazer date of 1690. The final change in the SNP Tree has to do with Chisolm. We don’t have a BigY for this YDNA relative. That means I don’t know if Chisolm goes with the mustard box or the orange one. I’ll leave him with the orange right now as there are so many SNPs there.

Summary and What’s Next

  • I have added Stewart to my SNP Tree and STR Tree
  • A BigY Test for Grant pointed out a mistake I made earlier for one of the variants on my proposed tree
  • The Grant BigY results may result in a small node where the Grants and Frazers had a common ancestor.
  • Once the R1a and L664 administrators are done with their analysis, I would like to see three or four levels below the official level of R-YP432 for Frazer. These would include branching for Hayes and Grant also.
  • I’m a bit unsure of Patton. He tested positive for R-YP5515 but is missing some of the other variants that are seen in other BigY results. However, that would not make a difference in the overall structure of the SNP Tree.
  • I am looking forward to a BigY test for the Stewart/Stuart in the group.